
Nathan Springer
@SpringerNathan
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Geneticist @Bayer4Crops. Views and opinions are my own.
Joined February 2012
RT @SazeLab: Special issue for Epigenetics and gene regulation 2023 in Current Opinion in Plant Biology, co-edited with @SpringerNathan !….
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Cool opportunity to work on developing applications of single-cell technologies for crop improvement on a fantastic team led by @rebeccalowdon
jobs.bayer.com
Genomics Data Scientist Single Cell Sequencing
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RT @ManishaMuna: 🚨 We've got a new preprint out 🚨 - We developed a series of logical frameworks for analyzing how transposable element cont….
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After ~20 years at the UMN today was my last day . I have been so lucky to work with wonderful people in my group and to have a fantastic set of collaborators. A huge thank you to all of my colleagues, collaborators and friends. Excited for a new journey @Bayer4Crops
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RT @shanwai1234: Why do the same gene in different varieties respond differentially under the environmental stimuli? We seek to answer the….
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RT @biorxiv_plants: Mapping Responsive Genomic Elements to Heat Stress in a Maize Diversity Panel #biorxiv_plants.
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RT @ThePlantCell: Plant Cell author Peng Zhou first author of Prediction of conserved and variable heat and cold st….
plantae.org
Current Position: Principal Investigator at Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS) Education: Postdoc (Maize Genetics) and PhD (Plant Pathology & Bioinformatics)…
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Excited to share @noshjac's last thesis chapter research. Monitoring accessible chromatin and DNA methylation in four maize genomes. Reveals that a large amount of variable methylation is due to shifting boundaries at the edge of methylated domains.
Stability of DNA methylation and chromatin accessibility in structurally diverse maize genomes #biorxiv_plants.
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RT @PlantPhys: Recognizing Plant Physiology first author Zhikai Liang @shanwai1234 author of Genetic and epigenetic….
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This was a fun project led by @orionzhou which taught me that many of my conceptions about cis-regulatory elements are flawed. Peng is a fantastic science, he'll be sorely missed at MN as he begins a new position.
Applying cis-regulatory codes to predict conserved and variable heat and cold stress response in maize #biorxiv_plants.
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I also am thankful for, and miss, a set of people that have recently gone on to new endeavors @pete_crisp @sna8 @taraenders .3/3.
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I am very thankful for the wonderful people I get to work with on a regular basis - @noshjac @orionzhou @erikalanemag @shanwai1234 @Hashtag_Read @AuthenticZAM @swedishenvy I miss in person interactions.2/n.
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This is a nice study led by @shanwai1234 that shows the variability of TE responses to abiotic stresses in different maize inbreds. Both genetics and epigenetics are important factors. Couldn't have happened without @sna8 @pete_crisp @noshjac @taraenders.
Genetic and epigenetic contributions to variation in transposable element expression responses to abiotic stress in maize #biorxiv_plants.
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RT @pete_crisp: Our latest: we use DNA methylation profiles to distill large genomes down to a small fraction of unmethylated regions (UMRs….
biorxiv.org
The genomic sequences of crops continue to be produced at a frenetic pace. However, it remains challenging to develop complete annotations of functional genes and regulatory elements in these...
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I should have included the link - old person twitter issues.
biorxiv.org
Transposable elements (TEs) have the potential to create regulatory variation both through disruption of existing DNA regulatory elements and through creation of novel DNA regulatory elements. In a...
Really nice work led by @noshjac that finds evidence for a subset of TEs that influence regulation of nearby genes. Made possible by great collaborations with @Schmitz_Lab @HirschCandice and many others!.
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RT @SpringerNathan: Really nice work led by @noshjac that finds evidence for a subset of TEs that influence regulation of nearby genes. Ma….
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Really nice work led by @noshjac that finds evidence for a subset of TEs that influence regulation of nearby genes. Made possible by great collaborations with @Schmitz_Lab @HirschCandice and many others!.
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Very nice work on imprinting by @sna8 When you develop new approaches that shine light in the corners you were ignoring sometimes you find some really cool things.
“Widespread imprinting of transposable elements and young genes in the maize endosperm”. Preprint online now - big thanks to collaborators @orionzhou @km_higgins26 @yanivbrandvain @SpringerNathan . Highlights below.
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