Plant Biotechnology and Bioinformatics
@PuckerLab
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Molecular Plant Sciences. Contact: https://t.co/3OaTnbzGym #PlantGenomics #SpecializedMetabolites #SynBio
Bonn
Joined March 2021
RT @PuckerLab: Investigation of the R2R3-MYB gene family in chickpea with collaborators at Bielefeld University and NIPGR:..
link.springer.com
Planta - We identified 119 typical CaMYB encoding genes and reveal the major components of the proanthocyanidin regulatory network. CaPARs emerged as promising targets for genetic engineering...
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RT @NewPhyt: Molecular and physiological characterization of brassinosteroid receptor BRI1 mutants in Sorghum bicolor. Rico-Medina et al. @….
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RT @PuckerLab: A genomic region linked to tolerance against beet cyst nematodes (BCN), a major sugar beet pest, was identified. A cluster o….
bmcgenomics.biomedcentral.com
Background Infection by beet cyst nematodes (BCN, Heterodera schachtii) causes a serious disease of sugar beet, and climatic change is expected to improve the conditions for BCN infection. Yield and...
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RT @PuckerLab: Vaccinium species are not just tasty—they're packed with flavonoids that boost health & color! 🌿🔬 Recent advances in genomic….
academic.oup.com
Abstract. The genus Vaccinium L. (Ericaceae) contains premium berryfruit crops, including blueberry, cranberry, bilberry, and lingonberry. Consumption of V
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RT @PuckerLab: 🍌 Bananas with a health boost? This study uncovers key transcription factors regulating anthocyanin biosynthesis in bananas!….
bmcresnotes.biomedcentral.com
Objective Bananas are one of the most popular fruits in the world, providing food security and employment opportunities in several developing countries. Increasing the anthocyanin content of banana...
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RT @PuckerLab: 🌿❄️ In the freezing, UV-intense Himalayas, Rheum nobile developed specialized leaves that trap warmth and filter light — cre….
nature.com
Communications Biology - A high-quality genome assembly and phylogenetic analysis for the glasshouse plant, Rheum nobile, shed light on its evolutionary history and ability to adapt to intensive UV...
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RT @PlantAdaptation: Great Postdoc job, fascinating biological system. Study evolution in action based on large-scale sequence data - check….
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RT @PuckerLab: Plants are molecular goldmines! 🌿🔬 New advances in plant genomics unlock their medicinal potential by mapping biosynthetic g….
bmcgenomics.biomedcentral.com
Recent developments in plant genomics have enabled a comprehensive analysis of the medicinal potential of plants based on their gene repertoire. Genes of biosynthesis pathways can be discovered...
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RT @denbiOffice: 🌱 @denbiOffice 🌱 will be supporting the @PLANT2030 "Introduction to #Bioinformatics" Spring School for early-stage #Plant….
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RT @PuckerLab: A first genomic look at Ceratophyllum submersum, a plant thriving in eutrophic waters. This study assembled its plastome, sh….
bmcresnotes.biomedcentral.com
Objective Eutrophication poses a mounting concern in today’s world. Ceratophyllum submersum L. is one of many plants capable of living in eutrophic conditions, therefore it could play a critical role...
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RT @PuckerLab: Boosting data literacy through hands-on genomics: Students dive into DNA sequencing, genome assembly, and gene annotation -….
degruyterbrill.com
With an ever increasing amount of research data available, it becomes constantly more important to possess data literacy skills to benefit from this valuable resource. An integrative course was...
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RT @PuckerLab: Meet bHLH_annotator - a Python-based pipeline for automated functional annotation of bHLH transcription factors! It streamli….
bmcgenomics.biomedcentral.com
Background The bHLH transcription factor family is named after the basic helix-loop-helix (bHLH) domain that is a characteristic element of their members. Understanding the function and characteris...
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RT @PuckerLab: 🌿🎨🧬 How were anthocyanins replaced by betalains? Multiple independent losses of the central anthocyanin synthesis gene TT19….
nph.onlinelibrary.wiley.com
In this study, we investigate the genetic mechanisms responsible for the loss of anthocyanins in betalain-pigmented Caryophyllales, considering our hypothesis of multiple transitions to betalain...
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RT @PuckerLab: 🌿🧬 On the future of plant genomics: From long-read sequencing to AI-powered functional annotation, this review explores the….
preprints.org
This review provides an overview of advancements in plant genomics, emphasizing key stages in genomics projects and addressing associated challenges. Long read sequencing enables the cost-effective...
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RT @PuckerLab: 🎨🌿 What drives color variation in plants? A large-scale analysis across flowering plants reveals that MYB transcription fact….
bmcplantbiol.biomedcentral.com
Background Anthocyanins are important contributors to coloration across a wide phylogenetic range of plants. Biological functions of anthocyanins span from reproduction to protection against biotic...
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🧬🔍 Introducing NAVIP – a new tool for predicting variant impacts more accurately! Unlike traditional methods, NAVIP considers the effect of neighboring variants within coding sequences:.#Genomics #Bioinformatics #VariantCalling 30/🧵.
journals.plos.org
Once a suitable reference sequence has been generated, intra-species variation is often assessed by re-sequencing. Variant calling processes can reveal all differences between strains, accessions,...
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🌱🔬 Maximizing data reuse in agricultural genomics! Key challenges - metadata gaps, interoperability, access barriers - and proposes solutions to unlock the full potential of genomic data. 🚀🌾.#Genomics #OpenScience 29/🧵.
academic.oup.com
Abstract. The scientific community has long benefited from the opportunities provided by data reuse. Recognizing the need to identify the challenges and bo
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