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NatureStructMolBiol

@NatureSMB

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Nature Structural & Molecular Biology publishes top-quality research providing insight into how molecular components work together in biological processes.

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@NatureSMB
NatureStructMolBiol
3 months
2024 marks 30 years since we published the first volume of NSMB! to celebrate, throughout 2024, we will be reflecting on the road covered & looking towards the future - check out many of the wonderful pieces from our readers, plus some of our thoughts:
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@NatureSMB
NatureStructMolBiol
5 years
Anthony Roberts & co report a #cryoEM structure of dynein-2 complex, suggesting mechanisms behind autoinhibition and transport on anterograde IFT trains With News & Views by Susan Dutcher
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NatureStructMolBiol
2 years
Can AlphaFold2 predict the impact of missense mutations on structure? Correspondence by @kyliejwalters & Gwen Buel:
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NatureStructMolBiol
3 years
AlphaFold2 and the future of structural biology: Patrick Cramer @CramerLab @mpi_bpc discusses the recently launched #AlphaFold2 by @DeepMind and how it will impact structural biology.
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NatureStructMolBiol
3 years
#cryoEM structures of SARS-CoV-2 ORF3a, an ion channel conserved in coronaviruses and a potential new drug target for #COVID19 . Work by @SteveBrohawn @Bautista_DianaM @AbhayKot @kerndm @chrismhoel et al. @berkeleyMCB
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NatureStructMolBiol
5 years
Crowdsourcing success @UWproteindesign ! Foldit players design f 56 new stable proteins from scratch, representing 20 different folds, including one not observed in natural proteins. Four newly determined structures validate the designs.
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NatureStructMolBiol
3 years
A #cryoEM structure of the active human melatonin receptor #GPCR in complex with Gi reveals conformational changes upon activation and basis for G-protein selectivity. Work from the Nureki, Inoue ( @TohokuSeika ) and Nishizawa labs led by @hhokamoto_en
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NatureStructMolBiol
3 years
#cryoEM structure of human mitochondrial RNase P bound to precursor tRNA reveals the molecular basis for first step of RNA processing in human mitochondria. Work by @hauke_hillen @BhattaArjun2p @c_dienemann @CramerLab @mpi_bpc
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NatureStructMolBiol
5 years
See movie, courtesy of Matthias Wolf
@NatureSMB
NatureStructMolBiol
5 years
Wolf @oistedu , Aizawa and colleagues use #cryoEM to reveal 11 different conformations in the curved flagellar hook See also NV from Ed Egelman , covering this and related work from the Namba group.
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NatureStructMolBiol
9 months
🐱🧬AUGUST ISSUE IS OUT! 🧬🐱 X-chromosome inactivation - insights from the active and inactive X chromosome We featured 3 papers on the cover, which investigate the molecular mechanisms of dosage compensation in mammals. issue:
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NatureStructMolBiol
2 years
Biochemical and cell-based assays reveal that PARP inhibitors impede maturation of nascent DNA strands during replication and implicate unligated Okazaki fragments and other nascent strand discontinuities in the cytotoxicity of these anti-cancer compounds.
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NatureStructMolBiol
3 years
#NMR & direct visualization of phase-separated FUS and Pol II domains in models of transcription condensates show a wider array of residue types & interactions that stabilize phases. Work by @Nicolas_Fawzi @BrownUResearch @CarneyInstitute @TAMUengineering
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NatureStructMolBiol
2 years
Biochemical and cell-based assays reveal that PARP inhibitors impede maturation of nascent DNA strands during replication and implicate unligated Okazaki fragments and other nascent strand discontinuities in the cytotoxicity of these anti-cancer compounds.
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NatureStructMolBiol
2 years
NSMB Research Highlights this month shine the spotlight on mitochondria. #1 "PINK spots: diseased mitochondria prepare for mitophagy" discusses 2 papers in @Nature & @MolecularCell by @komander_lab @gl_alisa &al and @jftrempe &al on PINK1 activation mech
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NatureStructMolBiol
3 years
Nanodiscs rule! Lipid environment promotes GPCR–G protein extensive interactions, as shown for neurotensin receptor by the Wagner, Nasr & @alanbrownhms labs @harvardmed .
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NatureStructMolBiol
7 months
📸another gentle reminder for the ongoing cover competition! 📸 Want to be featured on NSMB cover? submit a spectacular photo, a beautiful piece of data, an insightful drawing to our 30th anniversary cover competition. Deadline - end of November
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NatureStructMolBiol
3 years
#ICYMI : David Baker & colleagues @UWproteindesign describe two de novo designed protein classes that link phosphorylation by tyrosine and serine kinases to protein-protein association and provide potential new avenues to regulate cell function.
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NatureStructMolBiol
1 year
NSMB assemble ! team meeting in Berlin - so great hang out in person
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NatureStructMolBiol
3 months
Check out our Special Issue on Ubiquitin Biology ! We feature some really exciting science on the mechanisms underlying writing and reading ubiquitylation + some very thoughtful comments and perspectives on the field
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@NatureSMB
NatureStructMolBiol
8 months
Want to be featured on NSMB cover? Submit a spectacular photo, a beautiful piece of data, an insightful drawing to our 30th anniversary cover competition. Details:
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NatureStructMolBiol
2 years
. @FandWLab @HarvardCellBio @HHMINEWS report a structure of yeast seipin, a lipid droplet formation protein & suggest it forms a flexible cage in the ER #membrane , enabling triacylglycerol phase separation, #lipiddroplet growth & budding toward cytoplasm.
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NatureStructMolBiol
2 years
Zhou & colleagues @NIEHS show that DNA polymerase δ extrinsically proofreads errors made by both Pol ε and itself, and that the symmetry of #replication fidelity is achieved by cooperative efforts of intrinsic & extrinsic proofreading and #DNA MMR
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NatureStructMolBiol
3 years
@zhang_lab @qinhuirao @Yale report impressive #cryoEM structures of the HUGE outer arm #dynein (OAD) assembly on the axoneme that drives rhythmic ciliary beating.
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NatureStructMolBiol
2 years
Piwi-directed heterochromatin: On the cover of our February issue, we highlight work by @changwei_yu @juliusbrennecke &al @IMBA_Vienna on Panoramix SUMOylation on chromatin, connecting the piRNA pathway to heterochromatin formation. Full issue:
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@NatureSMB
NatureStructMolBiol
4 months
HAPPY 30th BIRTHDAY TO US🎂 First issue of NSMB came out in January 1994. Come celebrate with us 30 years of changes and progress in structural and molecular biology We are continuing celebrations throughout the year with more content, so stay tuned!
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NatureStructMolBiol
5 years
Structure maps of RNAs localized to chromatin, nucleoplasm and cytoplasm reveal an intricate interplay of #RNA structure, RNA-protein interactions and RNA modifications
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@NatureSMB
NatureStructMolBiol
7 years
Crystal structure of a complete bacterial microcompartment shell, 6.5MDa!
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NatureStructMolBiol
7 years
NOMPC (TRPN) cryoEM structure, 29 ankyrin repeats! Insights into tether model for channel gating & mechanosensing
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NatureStructMolBiol
2 years
#ICYMI : #cryoEM structure of the human SAGA complex reveals high-res details of core and TRRAP modules. Work by @Nogaleslab @berkeleyMCB @UCB_Biophysics @LBNLBioSci @TjianDarzacq
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@NatureSMB
NatureStructMolBiol
4 years
Cryo-ET work from @GaiaPigino & co @mpicbg @humantechnopole reveals the architecture of mammalian primary cilia.
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@NatureSMB
NatureStructMolBiol
7 years
3D structures of individual mammalian genomes studied by single-cell Hi-C @nature
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NatureStructMolBiol
5 years
. @lapassmore & colleagues show that Pan2 and the Ccr4–Not nuclease Caf1 recognize the intrinsic stacked, helical conformation of poly(A) RNA.
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@NatureSMB
NatureStructMolBiol
6 years
Perspective by Polymenidou @sciencemagazine : The RNA face of phase separation
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NatureStructMolBiol
3 years
#cryoEM structure of the human SAGA complex reveals high-res details of core and TRRAP modules. Work by @Nogaleslab @berkeleyMCB @UCB_Biophysics @LBNLBioSci @TjianDarzacq
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@NatureSMB
NatureStructMolBiol
3 years
Chaperones too can aggregate! Work from @buchnerlab_tum on eye lenses from mouse strains with mutations in α-, β-, or γ-crystallins challenge the prevalent model for cataract formation. #proteostasis #chaperones
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NatureStructMolBiol
2 years
#CryoEM work by Greiwe, Costa, Diffley &al @TheCrick shows how DDK selectively targets DNA-loaded MCM helicase to trigger #replication origin activation. Checkpoint kinase Rad53 blocks origin firing by impairing double hexamer engagement by DDK #openaccess
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@NatureSMB
NatureStructMolBiol
4 years
TET2-mediated hm5C modification of tRNA affects the levels of tRNA fragments (tRFs), which have previously been linked to the regulation transposable elements, translation and epigenetic inheritance.
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@NatureSMB
NatureStructMolBiol
3 years
@AunderbTommy888 私たちは日本語を話せませんが、Google翻訳の使い方は知っています 😉
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@NatureSMB
NatureStructMolBiol
3 years
The case for post-predictional modifications in the AlphaFold Protein Structure Database: In this correspondence @GABRAHREX @2016Carl @ElisaTelisa @glycojones present an approach to include post-translational modifications in #AlphaFold predictions.
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NatureStructMolBiol
2 years
Tn7 transposition depends on its AAA+ ATPase adaptor TnsC. A new #cryoEM structure from @alba_guarne & @shen_yao10 @mcgillu shows how TnsC targets DNA sequences between target & insertion sites to regulate sequence-specific transposon insertion.
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@NatureSMB
NatureStructMolBiol
5 years
#CryoEM structure of the 80S ribosome–Xrn1 nuclease complex reveals how the conserved core of Xrn1 allows binding at the mRNA exit of the ribosome, ensuring efficient mRNA degradation after the last round of translation.
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@NatureSMB
NatureStructMolBiol
2 years
DOPEGAL, a metabolite of noradrenaline in the locus coeruleus, covalently modifies Tau and accelerates its aggregation and propagation, leading to cognitive deficits in Alzheimer’s disease.
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@NatureSMB
NatureStructMolBiol
3 years
A study by Liz Carpenter and colleagues @UniofOxford @thesgconline reports the first crystal structure of a human ELOVL revealing an unexpected reaction mechanism & suggesting potential approaches for inhibition to treat disease
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@NatureSMB
NatureStructMolBiol
4 years
The expressome, a supercomplex with actively transcribing RNA polymerase and translating ribosome, is seen in Mycoplasma pneumoniae cells, using integrative approach combining cryo-ET and crosslinking/MS analyses. From Mahamid lab @embl & @RappsilberLab
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@NatureSMB
NatureStructMolBiol
10 months
Ingolia lab carried out a systematic survey of the budding yeast proteome and identified hundreds of post-transcriptional regulators. Regulatory activity often lies within intrinsically disordered regions @nickingolia @KendraReynaud
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@NatureSMB
NatureStructMolBiol
3 years
On the cover of our August 2021 issue, we highlight recent work by Brandão, Ren, @xindanw @leonidmirny and colleagues reporting beautiful Hi-C plots resembling historic tiles. Check out the full issue here:
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@NatureSMB
NatureStructMolBiol
3 years
Check out this collection of articles we helped put together for @NaturePortfolio in honor of @DJuliusSF and @ardemp , recipients of the the Nobel Prize in Physiology or Medicine 2021. Includes some amazing structural biology!
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@NatureSMB
NatureStructMolBiol
3 years
A fresh start: Meissner & colleagues @MPI_MolGen provide further evidence that Dnmt1 displays global de novo methylation activity, especially at retrotransposons
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@NatureSMB
NatureStructMolBiol
3 years
Target practice: first Piwi structure with RNA In this short piece, we highlight recent work by MacRae lab @scrippsresearch published in @Nature working out how Piwi selectively finds its transposable element RNA targets with the help of piRNA guides.
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@NatureSMB
NatureStructMolBiol
1 year
❄️our January issue is live❄️ on the cover we feature work from @davidwtaylorjr & @ArlenJohnson8 labs on how a single 2′-O-methylation of rRNA gates assembly of a functional ribosome
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@NatureSMB
NatureStructMolBiol
3 years
#CryoEM reveals structural basis for coupling specificity of one #GPCR , the β1-adrenergic receptor, to two different families of G-proteins. Work by Xin-Yung Huang @WeillCornell @HiteLabMSKCC and colleagues.
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@NatureSMB
NatureStructMolBiol
5 years
#cryoEM structures of human ribosome nascent chain complexes stalled by the drug-like molecule PF846 reveal its mechanism of action and follow up screens show its context dependent function.
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@NatureSMB
NatureStructMolBiol
4 years
Combination of a bicistronic biosensor w/ single-molecule tracking & computational modelling reveals kinetics of cap- vs IRES-mediated translation & shows that IRES bursts are shorter & rarer than bursts of cap translation, which reverses upon stress
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@NatureSMB
NatureStructMolBiol
5 years
The life and scientific contributions from Aaron Klug, commemorated by Daniela Rhodes:
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@NatureSMB
NatureStructMolBiol
2 years
Here, @JoshCofsky , @doudna_lab , and colleagues, use #CryoEM and biochemical analysis to investigate how the #CRISPR associated protein #Cas9 interrogates DNA to locate its RNA-matching target sequence @berkeleyMCB @igisci
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NatureStructMolBiol
9 months
🌊SEPTEMBER ISSUE IS ONLINE 🌊 We featured work from @WilsonLab2 on the cover, where authors present structures of 17 antibiotics bound to E.coli ribosomes. the full issue:
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@NatureSMB
NatureStructMolBiol
2 years
Our April issue cover features Strychnos toxifera, a plant from which the arrow poison curare can be extracted. Cryo-EM structures of muscle nicotinic receptors by @RyanHibbs10 @MahfuzRahmanPhD &al @UTSWBrain reveal its mechanism of action. Full issue:
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@NatureSMB
NatureStructMolBiol
2 years
#ICYMI : Ribosome cryoEM structures by @FujimoriLabUCSF @fraser_lab @shuramankin &al w/ the antibiotics linezolid & radezolid bound to the peptidyl transferase center & adjacent growing nascent peptide chain provide explanation for context-specific action.
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@NatureSMB
NatureStructMolBiol
3 years
New work from David Ron's lab @Cambridge_Uni @TheCIMR : Structures of the dephosphorylation complex of eIF2α-P reveal how contacts with the regulatory PPP1R15A subunit mediate substrate selectivity.
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@NatureSMB
NatureStructMolBiol
4 years
Live cell imaging of tagged genomic loci reveals clusters of distal enhancers in close proximity to target genes, creating a nano-environment wherein site-specifically recruited enhancer-associated regulatory factors activate transcription.
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@NatureSMB
NatureStructMolBiol
6 years
LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data
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@NatureSMB
NatureStructMolBiol
3 years
Cryo-EM structures tell a tale of two telomerases: A News & Views by Michael D. Stone and colleagues @ucsc discusses two recent papers in @nature reporting #telomerase #cryoEM structures by @KellyTHD_Nguyen and @FeigonLab
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@NatureSMB
NatureStructMolBiol
6 years
David Baker and collegues design transmembrane proteins, from monomers to tetramers, with up to 8 transmembrane segments in the oligomer.
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@NatureSMB
NatureStructMolBiol
5 years
NSMB celebrates the 50th year of eukaryotic gene transcription with a Focus collection of Reviews and Perspectives by Bob Roeder, Jim Kadonaga, Joan & Ron Conaway and John Lis NSMB editor Beth Moorefield looks forward to meeting you at @CSHL #moet2019
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@NatureSMB
NatureStructMolBiol
3 years
Stretching the resolution limit of atomic force microscopy: News and Views by @hoogenboom_lab highlighting and explaining an improved AFM technique called 'Localization AFM' developed by @George_R_Heath @ScheuringLab recently published in @Nature
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@NatureSMB
NatureStructMolBiol
2 years
Using #cryoEM , Christoph W. Müller & colleagues @EMBL @EMBLHeidelberg structurally investigate elongating RNA polymerase I at 2.7 Å as well as an RNA polymerase I open complex at 3.3 Å and bound to initiation factor RRN3 at 3.2 Å.
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@NatureSMB
NatureStructMolBiol
3 years
Two papers on Chlamydomonas cilia, from Vale lab @HHMIJanelia and from @alanbrownhms @harvardmed & Zhang @wustl , provide unprecedented detail into the radial spoke architecture and new insights into mechanoregulation.
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@NatureSMB
NatureStructMolBiol
3 years
High-resolution cryo-EM structures of human ATM bound to ATPγS and two distinct ATM inhibitors provide insights into the mechanism of inhibitor selectivity and offer a framework for structure-based drug design.
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NatureStructMolBiol
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Here, the authors use cryo-EM to solve the Arabidopsis thaliana Argonaute10 (AtAgo10)-guide RNA complex with and without a target RNA representing a slicing substrate, to provide insights into the slicing mechanism of a eukaryotic AGO
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@NatureSMB
NatureStructMolBiol
2 years
Out now @NatureSMB : #cryoEM structures by Darst & colleagues @RockefellerUniv & #MDsims @DEShawResearch show how the SARS-CoV-2 nsp13 helicase and RNA polymerase function together within the viral replication-transcription complex.
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@NatureSMB
NatureStructMolBiol
10 months
Rowland lab @NKI_nl and @dpanne1 show how SGO1 protects centromeric cohesin from WAPL-mediated release until the kinetochore/microtubules have formed functional attachments. They also show that SGO1 and CTCF similarly bind cohesin.
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@NatureSMB
NatureStructMolBiol
2 years
#cryoEM structures of human IMPDH1, a metabolic enzyme important in retinal function and disease, reveal polymorphic filaments. Blindness-associated IMPDH1 mutations are characterized & half disrupt feedback inhibition. Work by @kollmanlab @aniburr &al @UW
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@NatureSMB
NatureStructMolBiol
5 years
Beautiful 'butterfly' structure of RNase PNK reveals two molecular switches that coordinate nuclease and kinase function of this multi-enzyme pre-rRNA processing complex.
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@NatureSMB
NatureStructMolBiol
4 years
The structure of the SALL4-Pomalidomide-Cereblon-DDB1 complex provides insights for rational design of cereblon binding drugs with reduced teratogenic risk.
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@NatureSMB
NatureStructMolBiol
3 years
Dynamic changes in 2’-O-methylation of #rRNA in human cells lead to #ribosome heterogeneity and result in altered translation of select mRNAs, correlating with changes in cellular phenotypes. Work by @therealLundLab @UCPH_BRIC
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@NatureSMB
NatureStructMolBiol
5 years
Acetylation takes aim at mRNA: Choi & Meyer highlight a study by Oberdoerffer, Coller & co published in @CellCellPress , which identifies acetylated cytidine as a widespread mark in mRNAs that influences RNA stability and translation
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@NatureSMB
NatureStructMolBiol
2 years
#ICYMI : #cryoEM structures of the metazoan GET complex which targets nascent tail-anchored membrane proteins to the endoplasmic reticulum reveal interactions that coordinate client transfer between two protein chaperones. Work from @sshaolab @harvardmed
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@NatureSMB
NatureStructMolBiol
2 years
#ICYMI : PTEN is a key cell signaling lipid phosphatase that is regulated by C-terminal phosphorylation. Philip A. Cole and colleagues @harvardmed @BrighamWomens @BWHGenetics now used biophysical methods...(1/2)
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@NatureSMB
NatureStructMolBiol
2 years
Here, @JoshCofsky , @doudna_lab , and colleagues, use #CryoEM and biochemical analysis to investigate how the #CRISPR associated protein #Cas9 interrogates DNA to locate its RNA-matching target sequence @berkeleyMCB @igisci
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@NatureSMB
NatureStructMolBiol
3 years
Cryo-EM and X-ray crystal structures reveal the architecture of the human Xkr8-Basigin #scramblase complex, providing insights into the molecular mechanism of phospholipid scrambling. Work by Shigekazu Nagata and colleagues @osaka_univ @osaka_univ_e
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@NatureSMB
NatureStructMolBiol
5 years
From the Urban lab @JohnsHopkins @sciencemagazine : intramembrane rhomboid proteases distort surrounding lipids, allowing much faster diffusion than other integral membrane proteins. Perspective by Wolfe
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@NatureSMB
NatureStructMolBiol
2 years
#ICYMI : HDX-MS reveals that #SARSCoV2 spike ectodomain reversibly samples an open-trimer conformation, revealing epitopes for a pan-coronavirus antibody. Work by @ShawnMCostello @MarquseeLab &al @UCBerkeley @UCB_Biophysics
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@NatureSMB
NatureStructMolBiol
1 year
our current cover highlights work from @GaiaPigino lab on the molecular structure of IFT-A and IFT-B trains & anterograde transport of cargo into the cilia tip 🚂🚂 @samlacey745 @_Helen_Foster_ @humantechnopole
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@NatureSMB
NatureStructMolBiol
2 years
The winterly cover of our December issue features work by @Dr_Ellisdon @Dr_MLHalls @MonashBDI @LuptonCJ @bj_charles @sci_laura et al. reporting the structure of the autoinhibited neurofibromin dimer, a large loop-shaped scaffold. Check the full issue here:
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@NatureSMB
NatureStructMolBiol
2 years
#cryoEM structures of E. coli MutS at sequential stages of the ATP hydrolysis cycle reveal how ATP binding and hydrolysis and its modulation by DNA enable MutS to adopt different conformations during mismatch repair. Work by @ABorsellini &al @LUMC_Leiden
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@NatureSMB
NatureStructMolBiol
5 years
Zagotta & colleagues at @UWBiochemistry use tmFRET and Rosetta tools to develop a model for the HCN channel VSD under conditions of membrane hyperpolarization.
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@NatureSMB
NatureStructMolBiol
2 years
. @RyanHibbs10 @MahfuzR1985 &al @UTSWBrain reveal how the electric organ & skeletal muscle nicotinic acetylcholine receptor desensitizes in response to agonist & how the arrow poison curare antagonizes the channel by stabilizing a desensitized state.
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@NatureSMB
NatureStructMolBiol
5 years
We pay tribute to Michael Rossmann, an extraordinary structural biologist who was also an early advocate for data sharing.
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@NatureSMB
NatureStructMolBiol
2 years
2 papers in NSMB report #CryoEM structures of retinal rod and cone CNG channels, revealing 3:1 stoichiometry and a putative intracellular Arg gate. Jian Yang &al @Columbia @jacopomarino10 @psich_en @GSchertler @caesarbonn &al
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@NatureSMB
NatureStructMolBiol
3 years
News & Views by Dylan Taatjes @CUBoulder highlighting and comparing recent #CryoEM structures of the human transcription preinitiation complex (PIC) from the @YuanHe_NWU @CramerLab and Yanhui Xu labs.
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@NatureSMB
NatureStructMolBiol
3 years
LOL is for "localization of lipoprotein": Haohao Dong @SiChuanUniv and colleagues reveal the structural basis for how the LolCDE system mediates transport of bacterial lipoproteins to the outer membrane #cryoEM
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