GenomeMining
@MiningGenome
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Interested in #genomics #bioinformatics #plants #metabolism
Joined July 2020
Assistant Professor Job in Plant Molecular Biology at Université de Sherbrooke, Canada: https://t.co/KBv0WTKypC via @agristok
agristok.net
Université de Sherbrooke seeks a tenure-track professor in Plant Molecular Biology to develop a funded research program and teach
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“Magical things happen every day, if we allow it. Think of daylight, of the stars at night, a flower. A dandelion is a miracle.” - P. L. Travers (1899-1996). #Thanksgiving #nature
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My academic phase transitions. Emo botanist phase was a mood 😂
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CHALLENGER: Detecting Copy Number Variants in Challenging Regions Using Whole Genome Sequencing Data https://t.co/Vt6KVc1PvS DupyliCate - mining, classifying, and characterizing gene duplications https://t.co/5SSgazILXW
biorxiv.org
Paralogs, copies of a gene, form an important basis for novelty during evolution. Analysis of such gene duplications is important to understand the emergence of novel traits during evolution....
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A deep-time landscape of plant cis-regulatory sequence evolution https://t.co/irIdPBih4x Genetic factors explaining anthocyanin pigmentation differences https://t.co/aSQNN6bnZh
biorxiv.org
Background Anthocyanins represent one of the most abundant coloration factors found in plants. Biological functions of anthocyanins range from reproduction to protection against biotic and abiotic...
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'Dispersification' of Agalinis into South America is associated with hummingbird pollination and perennial life history shifts https://t.co/Ut3qTNFeA8 Phylogenomics Reveals Loss of Anthocyanin Biosynthesis Genes at the Family Level in Cucurbitaceae https://t.co/NeRbYV01jX
biorxiv.org
### Competing Interest Statement The authors have declared no competing interest.
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Genome and transcriptome of haustorial development in Pedicularis groenlandica reveal diverse trajectories of haustoria-associated gene evolution in parasitic plants https://t.co/sBaFyg6Fak Cookbook for Plant Genome Sequences https://t.co/I6DLpmdvaP
#Genomics #PlantSci
preprints.org
Access to genome sequences is crucial to investigate and engineer traits in plants, explore biodiversity, and support phylogenetic studies. During the last decade, affordable sequencing devices have...
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Snail plots are badges of genome assembly quality https://t.co/uswHZWPou9 Cookbook for Plant Genome Sequences https://t.co/I6DLpmdvaP
#Genomics #Bioinformatics #LongReads #BigData
preprints.org
Access to genome sequences is crucial to investigate and engineer traits in plants, explore biodiversity, and support phylogenetic studies. During the last decade, affordable sequencing devices have...
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After 10 Fridays, 10 flowers, and 100+ drawings, the Florédex is complete! ✨ Come take a tour of the design and science behind 10 iconic flowers 🌺🧵
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Fully Funded PhD in Food Process Engineering at ETH Zurich, Switzerland: https://t.co/Ei4dFI2Etr via @agristok
agristok.net
Apply for a fully funded PhD in Food Process Engineering at ETH Zurich. Join a 4-year research project on plant-based meat extrusion
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Dissecting the biosynthesis, regulation, and metabolic engineering of steroidal glycoalkaloids in tomato https://t.co/9tChZJrQFl
@JIPBio
onlinelibrary.wiley.com
This mini-review synthesizes recent advances in the biosynthesis and regulation of tomato steroidal glycoalkaloids and discusses the potential applications of metabolic engineering for targeted...
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MolEvolvR: A web-app for characterizing proteins using molecular evolution and phylogeny https://t.co/PXoDR7ouCE NAVIP: Unraveling the Influence of Neighboring Small Sequence Variants on Functional Impact Prediction https://t.co/UdIXpLJYUh
#Bioinformatics #Evolution
biorxiv.org
Once a suitable reference sequence has been generated, intraspecific variation is often assessed by re-sequencing. Variant calling processes can reveal all differences between strains, accessions,...
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A simple library preparation modification significantly reduces barcode crosstalk in ONT multiplexed sequencing https://t.co/zFztzEhxhT Cookbook for Plant Genome Sequences https://t.co/vlFBkIaRnq
#Genomics #ONT #LongReads #PlantSci #OpenScience
preprints.org
Access to genome sequences is crucial to investigate and engineer traits in plants, explore biodiversity, and support phylogenetic studies. During the last decade, affordable sequencing devices have...
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Detecting Foldback Artifacts in Long-reads https://t.co/eaVeNWp0bX Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis https://t.co/EwS4j48crw
#Bioinformatics #Genomics #ONT #LongReads
biorxiv.org
Background Experimental proof of gene function assignments in plants is based on mutant analyses. T-DNA insertion lines provided an invaluable resource of mutants and enabled systematic reverse...
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Efficient near telomere-to-telomere assembly of Nanopore Simplex reads https://t.co/ApU1xH1QAD Cookbook for Plant Genome Sequences https://t.co/vlFBkIaRnq
preprints.org
Access to genome sequences is crucial to investigate and engineer traits in plants, explore biodiversity, and support phylogenetic studies. During the last decade, affordable sequencing devices have...
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Short-term fluctuating and long-term divergent selection on sympatric Monkeyflowers: insights from repeated reciprocal transplants https://t.co/ACypwA0N1P Evolutionary Rewiring of Anthocyanin Biosynthesis Pathway in Poaceae https://t.co/jkGdfK6fOC
biorxiv.org
Poaceae is a species-rich family of plants in the monocots harboring many important crop species. As grasses, these plants lack striking flowers that are typically pigmented by anthocyanins. Here, we...
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Sequence-aware Prediction of Point Mutation-induced Effects on Protein-Protein Binding Affinity using Deep Learning https://t.co/IvSCyjuJOE NAVIP: Unraveling the Influence of Neighboring Small Sequence Variants on Functional Impact Prediction https://t.co/UdIXpLJYUh
biorxiv.org
Once a suitable reference sequence has been generated, intraspecific variation is often assessed by re-sequencing. Variant calling processes can reveal all differences between strains, accessions,...
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📌4 Fully Funded PhD Positions in Experimental Plant Sciences 🌱🧬 at Max Planck Institute for Plant Breeding and University of Cologne, Germany 🇩🇪, See details at: https://t.co/sHJGeDb6Mb
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"Technology always becomes obsolete, but a good aesthetic is, by definition, timeless" -Sheehan Quirke Preview of my flower design toolkit and its visual language.
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