Lisa Van den Broeck
@LisaVandenBroec
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Joined November 2019
Online Now: Transcription factor exchange enables prolonged transcriptional bursts https://t.co/P2F92skgCW
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Our first soybean phospho paper is out, with @RossSozzani @LisaVandenBroec, Anna Locke and many others funded by @FoundationFAR and several co-funders to understand temperature signalling in soybean @VIBLifeSciences @ugent @PSB_VIB @USDA @ILVOvlaanderen @NCState
💻 🌾 New software tools, including a deep learning model, help us find targets for crop improvement, thanks to great work by @LisaVandenBroec (@NCState) , @IveDeSmet1978 (@PSB_VIB), and colleagues from @USDA. https://t.co/Q2yfDaGjx5
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What if there was a way to: • Mitigate climate change • Create more life • Grow the economy • And make money along the way? Let's call it *Seaflooding*
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'Establishing a reproducible approach to study cellular functions of #plant cells with 3D #bioprinting' in @ScienceAdvances by @LisaVandenBroec @RossSozzani et al. @NCState recommended by @KatarzynaRetzer
https://t.co/urQ8KboswV
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I have a big tweet backlog: the amazing @LisaVandenBroec has a super cool preprint about kinases and phosphotases. Collaborating with Lisa is awesome.
researchsquare.com
Molecular biology aims to understand the molecular basis of cellular responses, unravel dynamic regulatory networks, and model complex biological systems. However, these studies remain challenging in...
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From today you can register at #ICAR2023. My mate @LisaVandenBroec and me @GarciaMolina_A will be chairing the session "A systems perspective: Omics integration and modeling". Looking forward to meeting you in Japan! https://t.co/ZhZtNJSWbc
adobsikabponorogo.org
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Publication alert 📢! An AI driven neural network to ascribe function of proteins in non-model plant species. Time series phosphoproteomics study courtesy #Ti_IMAC
https://t.co/HFCjmKWawf
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Our wonderful team: @RossSozzani, @IveDeSmet1978, and Anna Locke. @NC_PSI @NCState_PMB @VIBLifeSciences @ILVOvlaanderen @BASFAgro
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Using these tools we have identified two key cold temperature regulators in soybean: TOT3 and TOI5 We made both PFNET and NetPhorce available in an easy-to-use webtool or R package!
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Second, you can use NetPhorce to analyze your phosphoproteomics and identify the kinase/phosphatase - substrate interactions, allowing you to explore signaling cascades
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We have already annotated 6 species, including Arabidopsis, maize, rice, sorghum, wheat, and soybean.
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First you can use PF-NET, our protein annotation tool, to annotate the kinases and phosphatases in your species of interest
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Ever had the challenge that you lacked resources when studying non-model species? We developed a neural network & Bayesian network inference method that now allows you to identify key kinases/phosphatases in any species! Our newest preprint @ https://t.co/knFqQZOx13
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My review went live today. I argue that transcription factors find their binding sites using both protein-protein interactions and DNA binding interactions. It's halfway between a review and a perspective.
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Our new paper is out today!!!!!!!! Many congrats to our PhD student Yuki Sakamoto and thanks @DeVeylderLab for the wonderful collaboration! Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
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Lisa Van den Broeck from NCSU infers phosphorylation cascades in Arabidopsis from phospho-proteomics data. #ICAR2022 Concurrent10
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Ever wondered whether you can 3D bioprint live plant cells ? The answer is YES ! In our latest preprint, we established an approach for controllable deposition & maintenance of plants cells using #3Dbioprinting @RossSozzani @Schwartzbotany @3DBioprinterman
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Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation @Margare4129128 @HannahRaeThomas @LisaVandenBroec #PlantSci
https://t.co/TNZUND26ad
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Interested in graft incompatibility and xylem re-connection? Check out our paper: "Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation" in @ThePlantCell. https://t.co/9vDKmzebrx
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Register now for Wednesday's Future Leaders in Mechanobiology talk with @LisaVandenBroec from @sozzani_lab! https://t.co/oh2dQiODF9 This series aims to spotlight the postdocs and graduate students conducting exciting & impactful #mechanobiology research in plants & animals!
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