EvomicsLab
@EvomicsLab
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Exploring Omics in the Light of Evolution PI: @iAmphioxus
Guangzhou, Guangdong, China
Joined October 2020
📢Glad to share our genome paper on an early-diverged cephalochordate species, Asymmetron lucayanum! By decoding & analyzing this genome in a comparative genomics framework, we know better now regarding the genome and gene evolution in cephalochordates. https://t.co/5DIxohkIV7
biorxiv.org
Cephalochordates (amphioxus or lancelet) are considered as living proxies for ancestral chordates due to their key phylogenetic position and slow evolutionary rate. The genomes of living amphioxus...
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First #SMBE meeting for our lab!Definitely a memorable experience. Already looking forward to the next one! @OfficialSMBE #SMBE2025
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📢Our #SMBE 2025 Symposium (No. 3) on Experimental Evolution will be held today (7.22, Tuesday) at 10:30 in Room 4, Building No. 8. An associated poster session will be held at 14:00 (poster number: S3-P01~P16). Welcome to join! let's study evolution in action! 🥳 @OfficialSMBE
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Welcome to attend our Symposium on Experimental Evolution. Co-organized by Dao-Qiong Zheng, @iYeast_jingli and myself.
#SMBE2025 Symposium 3: Experimental evolution: studying evolution in action 🔗 https://t.co/b4nS3ZqIhE
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Glad to see the copy-edited version of our VRPG paper formally published in the latest issue of @genomeresearch ! We developed VRPG as a novel visualization framework for intuitively exploring pangenome graphs in a linear-reference-projected context. https://t.co/cJA6nGFaTo
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📢📢📢 The FINAL COUNT DOWN for the extended abstract submission deadline of #SMBE2025! Please submit your abstract by 23:59 (GMT +8) of February 15, 2025 [Saturday]! And shout out again for our Experimental Evolution symposium! 🎉🎉🎉 @OfficialSMBE #LTEE #ExperimentalEvolution
📢📢📢 #SMBE2025 Abstract Submission EXTENDED to Saturday, February 15, 2025 We also invite you to register at https://t.co/91fBe966Xq
@SMBEmeetings
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*** Notification: New class in Evolutionary Cell Biology open to the public during Spring 2025 semester The class is taught by Dr. Michael Lynch every Tuesday and Thursday, 9:00-10:15 am (MST), starting on 16 January 2025 Join: https://t.co/8WKjnCdaw3 Dtls: victor.chai@asu.edu
asu.zoom.us
Zoom is the leader in modern enterprise cloud communications.
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Many thanks to @Time_long_river for leading the development of VRPG. Built upon VRPG, we are currently working on new development and discoveries with #pangenome graphs. Stay tuned!
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Especially, VRPG enables side-by-side visualization between the graph-based pangenome representation and the conventional primary-linear-reference-genome-based feature annotations, which greatly increase the Interpretability of pangenome graphs.
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VRPG provides efficient & intuitive supports for exploring and annotating pangenome graphs along a linear-genome-based coordinate system and offers many highly useful features such as in-graph path highlighting, CNV and SV characterization, graph-based sequence query, etc.
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To facilitate better exploration & understanding of pangenome graphs towards novel biological insights, here we present a web-based interactive Visualization and interpretation framework for linear-Reference-projected Pangenome Graphs (VRPG).
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In the era of #T2T genomics, #pangenome graphs have emerged as a new paradigm for identifying, encoding, and presenting genomic variation at population levels. However, it remains challenging to dissect and interpret pangenome graphs in a biologically informative manner.
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📢🧬Proud to announce our 1st work on pangenome graphs is early online @genomeresearch! Here we developed an interpretative visualization framework for pangenome graphs named VRPG, which seamlessly bridges the graph and linear genomics world. https://t.co/eYsnOEZUYz
#pangenome
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📢 2nd-round abstract submission call for the 2025 @OfficialSMBE annual meeting in #Beijing . Where: https://t.co/WQ3x1WU8PN When: now - 2025/01/30. Welcome for all abstract submissions, especially for our Experimental Evolution Symposium !!!
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Attn: The abstract submission for the SMBE 2025 conference in Beijing @MolBioEvol is open now! Submission site: https://t.co/jT6reLgwkC Submission Deadline: Jan 30, 2025. Welcome for all abstract submissions, especially for our Experimental Evolution Symposium !!! #evolution
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Welcome to join our dedicated symposium on Experimental Evolution for the @MolBioEvol 2025 Beijing Meeting! See you in Beijing!
Glad to announce that our (with Dao-Qiong Zheng & @iYeast_jingli) proposed symposium on #ExperimentalEvolution has been selected for the @MolBioEvol 2025 conference in #Beijing! @PetrovADmitri will be our invited speaker! Please save the date and consider joining our symposium!
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The code of NanoTrans can be freely accesible via @github at
github.com
An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data - yjx1217/NanoTrans
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