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A data science lab and firm run by @juniperlsimonis | Design, Analysis, & Prediction for Population Ecology Research | #QueerInSTEM #BlackLivesMatter
Portland, OR
Joined December 2015
Now that the pipeline is back up and running, we are going to update the heck out of the summary and analysis code, as right now, the website only has a crude time series figure, and there's clearly much we can do! ๐งต / fin
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The shift from @travisci to @github runners was not too horrible, all things considered, just needed some time to work out the kinks. The old travis file is still in the repo for comparison to the github workflow, and its really similar. https://t.co/1nFqy8kgfv
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At some point while the build runner was offline, @CaliforniaDFW updated the url for the database, which we've now updated in the accessor @dockerhub image ( https://t.co/ykkqOQqQyj), but aside from that edit the @docker images are unchanged form nearly 3 years ago!
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note the workflow builds but does not push on pr! this is a handy way to check the CI of everything up to the deploy stage while testing features, something we also employ with the @docker image build for the @weecology portalcasting #Rstats package
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Basically, it's a treasure trove. For this project, we scrape the Access database, convert the accdb to csvs, run some quick summaries, update the website, and push the results to a @Netlify site every day on a cron jorb now managed w/@github's runners https://t.co/D6nMdev4hS
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legend: Average annual trajectories of daily volumetric water exports (a and b), raw delta smelt entrainment (c and d), and density of delta smelt entrainment (e and f) at the two main pumping plants for 1995โ2014. Dashed vertical lines and grey rectangles delineate time window.
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We also leveraged the Salvage database in a recent paper with CFS Principal Scientist Joe Merz on the federally listed Delta Smelt population. We used smelt observations and water volume exports from the salvage data to show relevant timing of surveys https://t.co/iDDQKt8Gjr
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We've used this database in a variety of projects since back when @JuniperLSimonis was working at Cramer Fish Sciences (CFS, w/whom we now collaborate), like building a Partially Observed Markov Process model under an #RShiny interface to estimate loss https://t.co/aOzAxUK8DQ
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.@CaliforniaDFW manages a collection of datasets from the many fish surveys and operations collections occurring in the California Delta, including daily updates to the Salvage Monitoring database, which is served publicly.
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https://t.co/mOvtrYL0b3 is back to daily automatic updates of salvage data! ๐ง๐ The stack ran hands-off every ding dong day from 2020-01-30 to 2021-06-11 when @travisci stopped free runs ๐ท๐ญ Been busy and sans ๐ฒ support, but finally migrated to @GitHubActions! ๐๐ผ ๐งต 1/
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@davsjob @DuckSwabber Hey @mcdietze @eco4cast @ethanwhite @DapperStats this looks like a nice package for flexible visualisation of forecast uncertainty components
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Big thanks to @KStackWhitney @NthChapter for pointing me to the "For Enders of Gender" R package by @DapperStats Given recent articles that use name=gender classifier #rstats users need to know about this package #TransAwarenessWeek ๐ณ๏ธโ๐ https://t.co/ljklrzMQ9A
github.com
Debinarizing gender. Contribute to dapperstats/gendrendr development by creating an account on GitHub.
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oh wowza just heard @roseveleth do the ad read for @DapperStats on @flashforwardpod and wow rose you are v v good tytyty bb
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apropos of everything, here's a reminder about gendrendr and the fact that you can CITE IT cause of course it's on @ZENODO_ORG even tho #RStats rejected it from CRAN... https://t.co/DtCsqPtECE
zenodo.org
Recognize the inherent individuality and personal nature of each person's gender or lack thereof. Do not assign genders to others.
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we encourage all of our non-black (and especially white) colleagues to participate as well. we believe in the need for active work to combat racism baked into institutions like the scientific enterprise and recognize that we all have to put more time and energy to that.
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This Wednesday, we will be participating in the Strike For Black Lives by spending our day engaged in personal education and anti-racist actions in support of our black colleagues (see https://t.co/xreU1Ykqvg)
#ShutdownSTEM #ShutdownAcademia #Strike4BlackLives #BlackLivesMatter
JUNE 10 STRIKE FOR BLACK LIVES Particles for Justice is calling for a one day minimum #Strike4BlackLives. We join the #shutdownstem #shutdownacademia movement. No business as usual!!!! Get details and sign the pledge here! Welcome, academics! https://t.co/eYgyeMYMIa
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