BindingDB
@BindingDb
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Enabling research by making a growing collection of high-quality, quantitative, binding data findable and usable. Funded by @NIGMS. @[email protected]
San Diego, CA
Joined December 2020
We are thrilled that ChEMBL 36 includes a LOT more of our open-access US Patent data! It's all about data-sharing :-)
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A recording of the latest BindingDB webinar, Synergies between BindingDB and PubChem, Dr. Christopher Southan, is now available here: https://t.co/5x9zTzrdVg
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Please join our second BindingDB webinar "Synergies between BindingDB and PubChem”, Dr. Chris Southan, Honorary Professor, University of Edinburgh, 8am California time, Wednesday, September 17! About 30 minutes, followed by open Q&A Register here: https://t.co/BLtVrP1wQF
uchealth.zoom.us
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To help with training and testing AI and other models, BindingDB downloads and search results now provide the publication date and BindingDB curation date of each measurement. #CADD
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😢
CASP is getting cut by NIH... 😢 (Anyone with extra funds wanna help support perhaps the most important competition of the century?) https://t.co/mOuROZYJLh
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Thanks to all who joined our first webinar this week! The recording, which includes some of the Q&A, is now posted on our website:
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Webinar 1: BindingDB: A Massive, Publicly Accessible, Knowledgebase of Protein-Ligand Binding Data -Mike Gilson -8:00 am Pacific Time, Feb 27, 2025 -Register here: https://t.co/E2CVxuulh4
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BindingDB is starting a series of free 1-hour webinars designed to be of interest to our users. We aim to host talks by members of the BindingDB team, BindingDB users, and other experts. We are excited to open this forum and look forward to meeting you! Details below 👇
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Webinar 1: BindingDB: A Massive, Publicly Accessible, Knowledgebase of Protein-Ligand Binding Data. -- Mike Gilson -- 8 am Pacific Time, Feb 27, 2025 -- Register here:
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BindingDB is starting a series of free 1-hour webinars designed to be of interest to our users. We aim to host talks by members of the BindingDB team, BindingDB users, and other experts. We are excited to open this forum and look forward to meeting you! Details below 😀
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I'm getting started on BlueSky as @bmix.bsky.social (Display name Michael K Gilson). See you there!
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We are excited to announce publication of our latest BindingDB update paper! https://t.co/MUrB60kuvg
academic.oup.com
Abstract. BindingDB (bindingdb.org) is a public, web-accessible database of experimentally measured binding affinities between small molecules and proteins
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BindingDB will be getting a hardware upgrade on Monday Oct 7 to deliver faster response times. There might be some downtime during this process.
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New Practical Cheminformatics Tutorial, “Analyzing Patent Data from BindingDB”.
colab.research.google.com
Run, share, and edit Python notebooks
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Details and an example URL are provided here: https://t.co/3qAJWh6x7K Feedback invited! 2/2
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Try the updated the BindingDB webservice to get data by PDB ID. This accepts a PDB ID, an affinity cutoff (nM), and a sequence identity cutoff and returns ligands for all target/ligand pairs where seq identity and affinity are better than your cutoffs (json or xml). 1/2
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Announcing our Q2 BindingDB release to the UC San Diego Library digital archive: https://t.co/TLVnSy78un This is a long-term archive of all the data currently in BindingDB, about 2.6 million experimental measurements.
library.ucsd.edu
Item from the Educational Dataset Service Collection--Machine-learning suitable datasets curated for use in instruction collection
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The pharma-provided protein-ligand datasets from the Drug Design Data Resource (D3R) are archived in BindingDB at https://t.co/I979uHcVAT There are 2554 compounds (238 of them "inactive") with data for multiple protein targets.
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