BindingDB
@BindingDb
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Enabling research by making a growing collection of high-quality, quantitative, binding data findable and usable. Funded by @NIGMS. @[email protected]
San Diego, CA
Joined December 2020
😢.
CASP is getting cut by NIH. 😢. (Anyone with extra funds wanna help support perhaps the most important competition of the century?).
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Thanks to all who joined our first webinar this week! . The recording, which includes some of the Q&A, is now posted on our website:
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Webinar 1: BindingDB: A Massive, Publicly Accessible, Knowledgebase of Protein-Ligand Binding Data.-Mike Gilson. -8:00 am Pacific Time, Feb 27, 2025 . -Register here:.
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BindingDB is starting a series of free 1-hour webinars designed to be of interest to our users. We aim to host talks by members of the BindingDB team, BindingDB users, and other experts. We are excited to open this forum and look forward to meeting you! . Details below 👇.
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Webinar 1: BindingDB: A Massive, Publicly Accessible, Knowledgebase of Protein-Ligand Binding Data. -- Mike Gilson.-- 8 am Pacific Time, Feb 27, 2025.-- Register here:
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BindingDB is starting a series of free 1-hour webinars designed to be of interest to our users. We aim to host talks by members of the BindingDB team, BindingDB users, and other experts. We are excited to open this forum and look forward to meeting you!. Details below 😀.
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I'm getting started on BlueSky as @bmix.bsky.social (Display name Michael K Gilson). See you there!.
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We are excited to announce publication of our latest BindingDB update paper! .
academic.oup.com
Abstract. BindingDB (bindingdb.org) is a public, web-accessible database of experimentally measured binding affinities between small molecules and proteins
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BindingDB will be getting a hardware upgrade on Monday Oct 7 to deliver faster response times. There might be some downtime during this process.
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RT @wpwalters: New Practical Cheminformatics Tutorial, “Analyzing Patent Data from BindingDB”.
colab.research.google.com
Run, share, and edit Python notebooks
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Details and an example URL are provided here: . Feedback invited!. 2/2.
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Try the updated the BindingDB webservice to get data by PDB ID. This accepts a PDB ID, an affinity cutoff (nM), and a sequence identity cutoff and returns ligands for all target/ligand pairs where seq identity and affinity are better than your cutoffs (json or xml). 1/2.
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Announcing our Q2 BindingDB release to the UC San Diego Library digital archive: This is a long-term archive of all the data currently in BindingDB, about 2.6 million experimental measurements.
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The pharma-provided protein-ligand datasets from the Drug Design Data Resource (D3R) are archived in BindingDB at There are 2554 compounds (238 of them "inactive") with data for multiple protein targets.
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It's cool that @mculecom has created a physical compound library of 65,000 compounds with known targets and activities from the BindingDB dataset! Info: CSV file: .
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Happy to report curation of the recent Covid Moonshot paper with data on compounds targeting covid M-protease:
pubmed.ncbi.nlm.nih.gov
We report the results of the COVID Moonshot, a fully open-science, crowdsourced, and structure-enabled drug discovery campaign targeting the severe acute respiratory syndrome coronavirus 2 (SARS-Co...
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RT @cdsouthan: Pleased to be presenting (remotely) in the 52nd British Patent Information Professionals (BPIP) meeting..
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What if BindingDB were hit by The Big One??? We have now safeguarded our data by cutting a full release to UC San Diego's Digital Library, a long-term archive with replicates in TX and MD, New versions will be released quarterly!.
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