Explore tweets tagged as #PyMOL
PymolFold: A PyMOL Plugin for API-driven Structure Prediction and Quality Assessment 1. PymolFold is a novel PyMOL plugin that integrates state-of-the-art protein structure prediction models like ESM-3 and Boltz2 into the PyMOL visualization environment, creating a unified
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Preparing PDB files for protein design usually means wrestling with PyMOL or ChimeraX. We're making it easier. Watch us use our new Prep Inputs feature to go from PDB fetch → structure trimming → hotspot selection → launching a design job in a leisurely 75 seconds.
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【libxml2】libxml2プロジェクトは放棄されました https://t.co/TtI2ULPcuh ｴｯｯｯｯ macOSデフォルトにも入っているし、PyMOLもlibxml2使ってるし どうなっちゃうの〜〜？？？
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I wrote up some notes on visualizing proteins in David Goodsell's cartoon-ish style using PyMOL (or ChatGPT, or other software.)
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o1-preview is decent at protein folding, roughly matching ESMFold. not great, still room for improvement, but cool nonetheless. funny that OpenAI refuses to pay for pymol and is running the trial version
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Today in "errors that aren't actually errors" the waters in OpenMM appear to leave the water box when visualized in pymol, but because of how periodic boundaries work the simulation isn't growing or getting dehydrated or anything. Pretty poor UI that's nonobvious to newbies
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a small attempt to learn from the pymol/chimera wizards
i spent a small fraction of my unemployment working on cartoonifying proteins in nicer ways
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Anyone know what program & settings was used to make these figs? I assume it isn't pymol or chimera
Protein designers have long dreamed of building new enzymes from scratch. Unfortunately, enzymes are highly dynamic; they move around a lot and have intermediate states that are difficult to design computationally. But a recent paper from David Baker’s group at the Institute
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New Blog & Video! Dock with natural language, set up representations in PyMOL, and analyze with spatial computing. Nanome AI (MARA + Nanome 2) brings the future of scientific workflows today ✔️ Streamline docking ✔️ Import PSE files ✔️ Analyze in XR [blog link in thread]
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Hacking PyMOL to render ORTEP-like thermal ellipsoids. The built-in ellipsoid representation cannot show principal axes. (test data: COD 3000438; H atoms removed for clarity)
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Did you know Nanome AI supports PyMOL session files? Load into MARA, tweak with natural language, then step into XR!
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Nanome can load PyMOL session files seamlessly, letting you explore your molecular visualizations in immersive 3D VR! 🔬✨ Plus, with natural language, you can ask questions, make changes, and analyze data effortlessly. check out the full blog on our website! 🚀
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Can PyMOL even accurately measure distances? Joe Laureanti, PhD shares how a poorly framed 2D image sparked a 30-minute debate among PhDs during a drug discovery meeting, and how VR could’ve resolved it in seconds. Full episode on YouTube or your favorite podcast app.
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