Dr. Alex Thompson Profile
Dr. Alex Thompson

@ecofiz1

Followers
405
Following
4K
Media
75
Statuses
608

postdoc @ucmerced Mathematical ecology, statistics, plant eco-physiology. Dad.

Joined January 2019
Don't wanna be here? Send us removal request.
@ecofiz1
Dr. Alex Thompson
6 months
RT @MathMatize: BREAKING: Trump has imposed 25% tariffs on the import of all Python libraries, with an extra 10% on NumPy .
0
2K
0
@ecofiz1
Dr. Alex Thompson
8 months
RT @geotripper: I'm feeling this so much right now.
Tweet media one
0
2K
0
@ecofiz1
Dr. Alex Thompson
8 months
RT @wmhammond: Do you want to join my plant ecophysiology lab studying plant stress and mortality? I am hiring a biological scientist, a pe….
0
52
0
@ecofiz1
Dr. Alex Thompson
9 months
RT @PeltierDrew: Please share widely. I am recruiting for two funded phd positions and a 2yr postdoc. Full ads: 1)….
0
90
0
@ecofiz1
Dr. Alex Thompson
9 months
Happy to announce I’ve started a new position at Rubicon Carbon as the Carbon Monitoring Scientist. I’ll be leading the monitoring of existing and future nature-based carbon offset projects.
0
0
3
@ecofiz1
Dr. Alex Thompson
10 months
RT @RichardHanania: Strong evidence showing that getting a PhD is extremely bad for your mental health. A new paper uses Swedish medical r….
0
1K
0
@ecofiz1
Dr. Alex Thompson
11 months
RT @leonardojo: It took me SEVEN years to figure out that you can save a ggplot as a vectorized .svg file ggsave("file.svg"). The svg file….
0
952
0
@ecofiz1
Dr. Alex Thompson
11 months
0
0
0
@ecofiz1
Dr. Alex Thompson
11 months
I’m pretty stoked about this paper because it links some pretty disconnected ideas from physiology, ecology, biochemistry, and mathematics to test an idea that has been really tough to test in the past. However, there remains lotsa work to do on this topic.
1
0
0
@ecofiz1
Dr. Alex Thompson
11 months
To summarize two key findings:. 1. Defenses of Pinus edulis are carbon limited during drought. 2. Stored defenses are likely more important for tree survival from bark beetles during drought.
1
0
0
@ecofiz1
Dr. Alex Thompson
11 months
Perhaps because we are very lucky people, bark beetles started to kill our study trees (about 40% of them died). This allowed to opportunistically test our models predictions. Altogether, our model had a correct classification rate of nearly 70%!
Tweet media one
1
0
0
@ecofiz1
Dr. Alex Thompson
11 months
When I simulate this across a range of alpha values, we find that this survival threshold increases exponentially with decreasing response rate
Tweet media one
1
0
0
@ecofiz1
Dr. Alex Thompson
11 months
This yielded an interesting result - trees that are slower to respond to an attack have to mount a larger defensive response to survive an attack!
Tweet media one
1
0
0
@ecofiz1
Dr. Alex Thompson
11 months
Finding this cusp point depends on some tree-specific parameters, specifically how quickly a tree can mount a defense. We quantified this by measuring how fast a tree maximized its resin flow relative to the fastest tree at the site
Tweet media one
1
0
0
@ecofiz1
Dr. Alex Thompson
11 months
To move forward, we want to know: at what threshold of carbon reserves does the fixed point of tree survival vanish? This is the cusp point in the figure two lines up.
1
0
0
@ecofiz1
Dr. Alex Thompson
11 months
We end up with three fixed points: two stable fixed points representing either beetle or tree mortality, and an unstable fixed point where both co-exist (unstable because that’s biologically impossible).
1
0
0
@ecofiz1
Dr. Alex Thompson
11 months
Without going into detail, these equations describe the change in defense and the change in successful beetle attacks as carbon reserves change. Using qualitative analysis, we can analyze the equations together and find their fixed points
Tweet media one
1
0
0
@ecofiz1
Dr. Alex Thompson
11 months
But… this doesn’t tell us much about whether the defenses we can actually attribute to de novo synthesis is enough for trees to survive. So we came up with a set of differential equations and referenced the Bible (i.e. @stevenstrogatz book) to analyze them
Tweet media one
2
0
0
@ecofiz1
Dr. Alex Thompson
11 months
This implies that *most* of the defenses that seemed to be induced were actually old, and were translocated from elsewhere in the tree to the site of inoculation!.
1
0
0
@ecofiz1
Dr. Alex Thompson
11 months
So, we inoculated trees with the fungus and measured pre and post inoculation defenses and carbon reserves. What we found was honestly surprising: local carbon reserves couldn’t support the defenses we measured.
Tweet media one
1
0
0