Quadruplex_Papers
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Bot for G-quadruplex papers update
Joined September 2020
Human ARMC6 binds in vitro to both cancer genes and telomeric RNA, favoring G-quadruplex structure recognition
pubmed.ncbi.nlm.nih.gov
Armadillo repeat-containing proteins (ARMCs) are a large family found throughout eukaryotes, which play prominent roles in cell adhesion, signaling and cytoskeletal regulation. The ARMC6 protein is...
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Ratiometric electrochemical aptasensor with strand displacement for insulin detection in blood samples
pubmed.ncbi.nlm.nih.gov
The sensor was adapted for detection in real blood and is ready for future PoC diagnostics. The capability of monitoring the insulin level in an affordably manner can improve the treatment for an...
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Eukaryotic Pif1 helicase unwinds G-quadruplex and dsDNA using a conserved wedge
pubmed.ncbi.nlm.nih.gov
G-quadruplexes (G4s) formed by guanine-rich nucleic acids induce genome instability through impeding DNA replication fork progression. G4s are stable DNA structures, the unfolding of which require...
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Strategy for modeling higher-order G-quadruplex structures recalcitrant to NMR determination
pubmed.ncbi.nlm.nih.gov
Guanine-rich nucleic acids can form intramolecularly folded four-stranded structures known as G-quadruplexes (G4s). Traditionally, G4 research has focused on short, highly modified DNA or RNA...
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Structural analysis of peptide identified from the 2KRR domain of the nucleolin protein with a c-Myc G4 structure using biophysical and biochemical methods
pubmed.ncbi.nlm.nih.gov
For the first time, the c-Myc G4 structure is reported to be stabilized by binding of the peptide (derived from the 2KRR domain of the nucleolin protein called the Nu peptide) in the loop region of...
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CRISPR/Cas12a-Based APE1 Enzyme Cleavage Assay for Drug Resistance Analysis of Staphylococcus aureus-Related Pneumonia
pubmed.ncbi.nlm.nih.gov
Drug resistance analysis of Staphylococcus aureus is responsible for generating significant mortality and morbidity in numerous diseases. However, sensitive and accurate analysis of drug resistance...
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The Interaction of a Gemini Surfactant with a DNA Quadruplex
pubmed.ncbi.nlm.nih.gov
DNA secondary structures are stabilized by mono- and divalent cations. To examine the stability of the DNA quadruplex formed from (TTAGGG)4, its interaction with a dicationic Gemini surfactant in...
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Quantitative Effects of the Loop Region on Topology, Thermodynamics, and Cation Binding of DNA G-quadruplexes
pubmed.ncbi.nlm.nih.gov
The thermal stability of G-quadruplexes is important for their biological roles. G-quadruplexes are stable in the presence of cations such as K+ and Na+ because these cations coordinate in the...
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An unbiased lncRNAs dropout CRISPR-Cas9 screen reveals RP11-350G8.5 as a novel therapeutic target for Multiple Myeloma
pubmed.ncbi.nlm.nih.gov
Multiple myeloma (MM) is an incurable malignancy characterized by altered expression of coding and noncoding genes promoting tumor growth and drug resistance. Although the crucial role of long...
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Enzyme Fueled Dissipative Self-assembly of Guanine Functionalized Molecules and Their Cellular Behaviour
pubmed.ncbi.nlm.nih.gov
Generally, an esterase lipase enzyme can hydrolyze specific substrates called esters in an aqueous solution. Herein, we investigate how a G-quadruplex self-assembly affects the hydrolysis equilibrium...
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Artificially inserted strong promoter containing multiple G-quadruplexes induces long-range chromatin modification
pubmed.ncbi.nlm.nih.gov
Although the role of G-quadruplex (G4) DNA structures has been suggested in chromosomal looping this was not tested directly. Here, to test causal function, an array of G4s, or control sequence that...
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An i-motif-regulated enhancer, eRNA and adjacent lncRNA affect Lhb expression through distinct mechanisms in a sex-specific context
pubmed.ncbi.nlm.nih.gov
Genome-wide studies have demonstrated regulatory roles for diverse non-coding elements, but their precise and interrelated functions have often remained enigmatic. Addressing the need for mechanistic...
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NMR screen reveals the diverse structural landscape of a G-quadruplex library
pubmed.ncbi.nlm.nih.gov
G-quadruplexes are noncanonical nucleic acid structures formed by stacked guanosine tetrads. Despite their functional and structural diversity, a single consensus model is typically used to describe...
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Mechanistic Insights into the c-MYC G-Quadruplex and Berberine Binding inside an Aqueous Two-Phase System Mimicking Biomolecular Condensates
pubmed.ncbi.nlm.nih.gov
We investigated the binding between the c-MYC G-quadruplex (GQ) and berberine chloride (BCl) in an aqueous two-phase system (ATPS) with 12.3 wt % polyethylene glycol and 5.6 wt % dextran, mimicking...
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No evidence of Bartonella infections in host-seeking Ixodes scapularis and Ixodes pacificus ticks in the United States
pubmed.ncbi.nlm.nih.gov
Owing to the lack of Bartonella detection in a large number of host-seeking Ixodes spp. ticks tested across a broad geographical region, our results strongly suggest that I. scapularis and I....
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Self-assembly of DNA G-quadruplex nanowires: a study of the mechanism towards micrometer length
pubmed.ncbi.nlm.nih.gov
The G-quadruplex (GQ) formed by guanine-rich DNA strands exhibits superior thermal stability and electric properties, which have generated substantial interest in applying GQ DNA to bioelectric...
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Structural insights into i-motif DNA structures in sequences from the insulin-linked polymorphic region
pubmed.ncbi.nlm.nih.gov
The insulin-linked polymorphic region is a variable number of tandem repeats region of DNA in the promoter of the insulin gene that regulates transcription of insulin. This region is known to form...
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Fluorescence based metabisulfite sensing: New aspects of ion sensing by a styryl benzothiazolium dye and understanding nitrite interference
pubmed.ncbi.nlm.nih.gov
Detection of specific ions using fluorescent probes has relevance in several areas of therapeutics development and environmental science. Here, we provide new perspectives to the sensing of a styryl...
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Investigation of G-Quadruplex DNA-Mediated Charge Transport for Exploring DNA Oxidative Damage in Telomeres
pubmed.ncbi.nlm.nih.gov
The human telomeric DNA 3' single-stranded overhang comprises tandem repeats of the sequence d(TTAGGG), which can fold into the stable secondary structure G-quadruplex (G4) and is susceptible to...
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Heterozygous RPA2 variant as a novel genetic cause of telomere biology disorders
pubmed.ncbi.nlm.nih.gov
Premature telomere shortening or telomere instability is associated with a group of rare and heterogeneous diseases collectively known as telomere biology disorders (TBDs). Here we identified two...
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