Dileep Kishore
@KishoreDileep
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Bioinformatics PhD Student. Microbiome researcher. Open source enthusiast. Interested in bioinformatics, AI, algorithms and quantified-self.
Boston, MA
Joined May 2018
Growing datasets of #Microbial_Interactions have enormous potential to advance integrative #Microbiome research. In this Perspective, @alanrpacheco @charlie_pvrt @KishoreDileep @dsegre propose #FAIR principles for #OpenData standardization https://t.co/Xguu0oZjkn
journals.asm.org
Despite an ever-growing number of data sets that catalog and characterize interactions between microbes in different environments and conditions, many of these data are neither easily accessible nor...
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All these discussions have now coalesced in this perspective piece where along with @KishoreDileep, we argue that the #microbialecology community has a lot to gain from considering #FAIR practices in reporting and sharing microbial interaction data. https://t.co/WIg4JLJgFV 7/12
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Growing datasets of #microbial_interactions have enormous potential to advance integrative #microbiome research. Let's increase it using #FAIR principles and #OpenData. A nice collab with @alanrpacheco @KishoreDileep @dsegre (1/3)
journals.asm.org
Despite an ever-growing number of data sets that catalog and characterize interactions between microbes in different environments and conditions, many of these data are neither easily accessible nor...
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If you work in a lab you know how much single-use plastic gets thrown out. Did you know there was a good number of plastics in your lab that can be recycled or reused? Here is a non-exhaustive list of stuff you can recycle and how to recycle it! 1/ #labsustainability #greenlab
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I’m interviewing the first guest for the Huberman Lab Podcast tomorrow. If anyone can guess who it is, Costello will send you one of our lab hoodies.
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The NFT market has grown, As eight-figure auctions have shown. The overall price is A worse climate crisis For art you pretend that you own.
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Really delighted to announce my upcoming textbook @SysBioBook "An Introduction to Computational Systems Biology: Systems-level Modelling of Cellular Networks" by @routledgebooks (Taylor&Francis) https://t.co/l1s1syBeKi
#SystemsBiology @iitmbt @IBSE_IITM @rbc_dsai_iitm @iitmadras
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The things you take pride in are the same things you are likely to be biased about. How might the things you take pride in be misleading you? The tighter you cling to your current identity, the harder it becomes to grow beyond it.
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Very excited to have this review out! We cover major sources of uncertainty in genome-scale metabolic modeling and approaches developed for addressing this uncertainty. We hope this review will serve as a roadmap for those interested in further developing methods in this area!
Addressing uncertainty in genome-scale metabolic model reconstruction and analysis, @GenomeBiology
https://t.co/dbNpN7Co26 by @d_b_bernstein, @SnorreSulheim, @AlmaasLab
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Our preprint on how "mere" sequence neighbourhoods (mutational "context") can reliably predict pathogenic mutations in cancer genomes is now available via @biorxivpreprint -- very interesting work with @ravi_iitm and Shayantan Banerjee at @IBSE_IITM @rbc_dsai_iitm!
Sequence neighborhoods enable reliable prediction of pathogenic mutations in cancer genomes https://t.co/JHgWyUlcYu
#bioRxiv
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Check out our new preprint: Introducing and benchmarking the accuracy of cayenne: a Python package for stochastic simulations
biorxiv.org
Biological systems are intrinsically noisy and this noise may determine the qualitative outcome of the system. In the absence of analytical solutions to mathematical models incorporating noise,...
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We just released v1.0 of cayenne, our Python package for stochastic simulations! Read on to find out if you should model your system as a stochastic process, and why you should try out cayenne https://t.co/nZ5ZmcMuSv
medium.com
TL;DR; We just released v1.0 of cayenne, our Python package for stochastic simulations! Read on to find out if you should model your…
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The Tim Ferriss Show | Neil Gaiman — The Interview I've Waited 20 Years ... https://t.co/z58U9FTtZh via @YouTube
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Superb article by Antoine Danchin, @vdlorenzo_CNB et al. in #Microbial #Biotechnology: molecular Maxwell's Demons (probably not as cute as the one pictured) govern cell processes · HUGE impact on #SynBio and #Metabolic #Engineering: it's all about #thermodynamics and information!
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Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems - in @NatureComms from @dsegre "2 million pairwise growth simulations of 24 species in a combinatorial assortment of environments" https://t.co/xpwB7wEWLq
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Are you developing mathematical models of biological processes? Not sure about the values to use for your rate laws? Try our new parameter search: https://t.co/PGEq0xXztF. Feedback welcome: biomodels-net-support@lists.sf.net
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