Jordan Ramilowski
@JARamilowski
Followers
29
Following
160
Media
1
Statuses
99
Professor, Bioinformatics meets Biology
Tokyo, Japan
Joined November 2013
connectomeDB2025: Quality matters! ✅3,579 ligand-receptor pairs supported by 2,803 papers ✅14 vertebrates ❌ >2,900 unsupported pairs from other DBs excluded https://t.co/mY39kbjqUD
https://t.co/aBiSNWUxRx
@JARamilowski @sakura_maezono @rui_hou_ @weitao_lin @yen_yeow + team
1
9
25
Interested in a tool that aligns millions of proteins in minutes with quality similar to or better than the state-of-the-art utilities? Please take a look at our FAMSA2 paper: https://t.co/Lheueutjp2 and GH repo:
github.com
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM) - refresh-bio/FAMSA
1
29
86
1/ I am happy to share that our latest research paper is now available as a preprint on bioRxiv! 🧠🧬Integrative Transcriptomics Reveals Layer 1 Astrocytes Altered in Schizophrenia https://t.co/iGBhRra75p
1
15
28
Registration open! Karolinska Institutet ‒ RIKEN Joint International Doctoral Course 2023 Bioinformatics Analysis and Visualisation of Medical Genomics Data Oct 11-17, Onsite at RIKEN Yokohama (includes Oct 18 Symposium at RIKEN Yokohama) https://t.co/FZuNzmaYtq
0
5
5
While Christmas is approaching, I’d like to announce that I’m hiring! Looking for a technician/senior to develop and implement genomic technologies (of the type like CAGE, Radicl-seq etc) to broadly map functions of lncRNA and the noncoding genome.
0
12
18
Looking for an exceptionally skilled person to develop and implement genomic technologies for a position of technician/senior technician, to join the group in Milan! 10 days left to apply. https://t.co/Xc2RL7K6Vo
0
9
14
Opportunity for a computational biologist to make an impact finding drug targets in infectious disease! https://t.co/1sV77oFznd
1
1
4
1/Revised preprint on the #FANTOM6 analysis of lncRNAs in the 3D genome now available at @biorxivpreprint!
biorxiv.org
The human genome is pervasively transcribed and produces a wide variety of long non-coding RNAs (lncRNAs), constituting the majority of transcripts across human cell types. Studying lncRNAs is...
3
14
48
Happy to see the https://t.co/FkQUUv4Wq3 out at @genomeresearch. We have been exploring the cap-trapper technology to sequence both long and short cap-selected (full-length) RNAs, including longer reads, using THP-1 cells stimulated with PMA. Unsurprisingly, we found new RNAs.
1
13
51
Join us! (バイオインフォマティクス解析センター助教) https://t.co/CXs6wfSHKv Assistant Professor(助教) #Bioinformatics #MachineLearning #immunology #CancerResearch
0
0
1
RIKEN says it hopes those who are forced out “will be able to continue their research activities at universities, research institutes, and private companies in Japan and overseas.” Well hope doesn’t quite help does it?
0
0
1
Updated CAGE protocol, not single cell, but reduced RNA input. Useful for: - survey of promoters+enhancers usage, comparing many conditions (96 well format) - Deeper sequencing possible by processing aliquots of the same RNA in multiple wells, https://t.co/6HEfFfEgmD
link.springer.com
The Cap Analysis of Gene Expression (CAGE) is a powerful method to identify Transcription Start Sites (TSSs) of capped RNAs while simultaneously measuring transcripts expression level. CAGE allows...
1
7
27
Interested in computational genomics at senior manager level? Join us at the Center for Genomics- Functional Genomics program at the Human Technopole. https://t.co/2Ts6xvKRQt
0
3
4
The FANTOM server will not be available due to the power maintenance of the server room. [Time] Feb 4th, 2022 13:00 - Feb 6th, 2022 20:00 (at latest). [Targets] all servers We are sorry for your inconvenience.
0
2
1
Two updated protocols (CAGE and RADICL-seq analysis). For the whole community, but... Back in September we paid for each article the open access fee for free download. Unfortunately, not yet happening. Sorry not our fault. https://t.co/iSJCmhURMK
https://t.co/GlMCUyOeTw
pubmed.ncbi.nlm.nih.gov
The Cap Analysis of Gene Expression (CAGE) is a powerful method to identify Transcription Start Sites (TSSs) of capped RNAs while simultaneously measuring transcripts expression level. CAGE allows...
1
4
12
About two weeks left to apply to the position of Manager of the Multiomic Technologies - Genomics Core Facility at the Human Technopole. Looking for someone special for this key role! https://t.co/k44PWdxeRl
0
11
9
Human Technopole, Head of Computational Genome Facility, last two days to apply. RT appreciated. https://t.co/6icw7knPKk
0
60
35
Functional annotation of human long noncoding RNAs using chromatin conformation data
0
0
2
(2) Senior/Research technicians: https://t.co/wWZf57Gv6x (3) We are also looking for managers for the sequencing facility and the multiomics facility. https://t.co/GoWYgABVmc
https://t.co/Lp28V5veAp Retweets/forwarding to interested colleagues appreciated!
0
13
9