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Jinxin Phaedo Chen Profile
Jinxin Phaedo Chen

@ChenPhaedo

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PhD student @BicroLabs at @karolinskainst and @scilifelab; previous BIOPICian @PKU1898; Developing next-gen sequencing techniques; 3D genome organization

Stockholm, Sweden
Joined December 2020
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@Mykalt45
Michael Torres
11 days
A new Nature study just mapped >16 million immune cells across 300+ people. The punchline: immune aging follows a predictable, programmable transcriptomic drift. Aging is software. Not entropy. @Molecule_sci @vitadao @BioProtocol 🔗 Paper:
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nature.com
Nature - This multi-omic longitudinal analysis of the healthy human peripheral immune system constructs the Human Immune Health Atlas and assembles data on immune cell composition and state changes...
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@wildtypehuman
Jake P. Taylor-King
3 months
Much of the active learning literature avoids modelling the bias and noise of the underlying experimental system...
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@zenbrainest
BryanRoth
3 months
This is an AMAZING PAPER!! Shank3 oligomerization governs material properties of the postsynaptic density condensate and synaptic plasticity: Cell
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cell.com
The postsynaptic density (PSD) condensates in neuronal synapses are soft glass-like structures due to the formation of highly percolated protein-protein interaction networks. Shank3 oligomerization...
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@JingchuanLuo
Jingchuan Luo
3 months
I'm thrilled to share our work from @JswLab ( https://t.co/CMzQznSXPN). We developed LOCL-TL, an optogenetic approach for monitoring localized translation in mammalian cells. LOCL-TL revealed two mechanistically distinct strategies for mitochondrially localized translation.
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@yodai_takei
Yodai Takei
4 months
I'm excited to share our new preprint on LagTag, a method that recovers both past and present chromatin states from the same mammalian cells. https://t.co/GEGQpN0Ff0
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@NatureNano
Nature Nanotechnology
4 months
Now online: Ångström-resolution imaging of cell-surface glycans. The molecular organization of sugars in the native #glycocalyx has been resolved at 9 Å using bioorthogonal metabolic labeling & #superresolution imaging of DNA barcodes. #Glycotime https://t.co/HmPzI6ghpa
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nature.com
Nature Nanotechnology - By combining bioorthogonal metabolic labelling and resolution enhancement through sequential imaging of DNA barcodes, the molecular organization of individual sugars in the...
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@aemonten
Alejandro Montenegro
5 months
"Here we present the first direct evidence that H3K4me3 is not a cause but a consequence of transcriptional activation, functioning as a downstream epigenetic response"
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biorxiv.org
Histone H3 Lysine 4 trimethylation (H3K4me3) is widely recognized as a hallmark of actively transcribed gene promoters, yet its precise role in transcriptional regulation remains unresolved[1][1]–[...
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@tapas1889
Tapas Paul
5 months
Thanks TJ @taekjip for giving me the opportunity to work on this, “Mechanistic insights into direct DNA and RNA strand transfer and dynamic protein exchange of SSB and RPA” https://t.co/LMGHFm6nuQ
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academic.oup.com
Abstract. Single-stranded DNA-binding proteins (SSBs) are essential for genome stability, facilitating replication, repair, and recombination by binding si
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@ChenPhaedo
Jinxin Phaedo Chen
5 months
Wonderful work by @Wu_Honggui , @JiankunZhang21 ,@tanlongzhi and @XieSunney ! Unprecedented resolutions of single-cell 3D genome structure!🔬🧬
@Wu_Honggui
Honggui Wu
5 months
Our scMicro-C paper is out in @NatureGenet! Huge thanks to the reviewers for their valuable insights, to @XieSunney for unwavering support, and to fantastic collaborators @JiankunZhang21 & @tanlongzhi. Thrilled to share this work!
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@MolecularCell
Molecular Cell
5 months
Online Now: Regulation of somatic hypermutation by higher-order chromatin structure https://t.co/QdBUNrgCDQ
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@SStevenWang
Siyuan (Steven) Wang
6 months
Introducing Epi-PHR, the first non-disruptive, high-genomic-resolution, image-based epigenetic profiling method. Allelic Epi-PHR generates the first single-cell phased examination of histone mark deposition and 3D genome architecture at an imprinted locus by any technique. 1/8
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@IsaacLiLab
Isaac Li
6 months
Latest from the lab:🧬Decoy DNA🧬can extend the lifetime of DNA-based tension probes >24h by outcompeting DNases and preserving signal integrity in live-cell tension imaging - simple, general strategy for robust mechanobiology in DNase-rich environments. https://t.co/k8QmRYAIio
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@MolecularCell
Molecular Cell
6 months
FACT weakens the nucleosomal barrier to transcription and preserves its integrity by forming a hexasome-like intermediate https://t.co/V0cGQ07qjh
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@strnr
Stephen Turner 🦋 @stephenturner.us
7 months
Terminal Genome Viewer (tgv), written in Rust https://t.co/IJDBqud8sG
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@nchembio
Nature Chemical Biology
7 months
A new paper reveals that m6A is enriched in gamma satellite DNA II RNA transcripts, regulating satellite transcription and chromosome segregation https://t.co/bWoT6dijQj
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nature.com
Nature Chemical Biology - Profiling nuclear N6-methyladenosine (m6A) modifications revealed enrichment of m6A on nuclear RNAs derived from chromosome pericentromeric γ satellite DNA II...
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@pdhsu
Patrick Hsu
7 months
Stylus originated from a wonderful scientific collaboration discovering serine DNA recombinases with Ami Bhatt, @BintuLacra, and @MCBassik spearheaded by star researchers @mgdurrant @AlisonFanton @JoshTycko A huge thanks also to Cosmas Giallourakis and @eminkow for their
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@ChenPhaedo
Jinxin Phaedo Chen
7 months
Thank you @ItaiYanai and the everyone for such exceptional workshops! It's valuable in expanding my perspectives and mindsets. These workshops are essential for researchers. I'll more enjoy the epiphanies and mystic encounters in my contradictory data now 🐘☕!
@ItaiYanai
Itai Yanai
7 months
Night science is improvisations, openness, import/export, puzzle switching, hypothesis liabilities, metaphors/analogies, finding questions, contradictions & awe in science; as we discussed yesterday in the legendary Karolinska Institute. 🙏@Katrinardottir @chris_zie @sandberglab
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@EdJiayu
Jiayu Su
7 months
[1/n]📢How is your spatial analysis *transcript*-omic if transcripts are only aggregated to gene counts? Introducing SPLISOSM, our new computational method for learning the isoform landscape and its regulation from spatial transcriptomics data https://t.co/eBwnwA8Twx
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@naturemethods
Nature Methods
7 months
Introducing FISHnet, a graph-theory-based method for sensitive and specific identification of chromatin domains from single-cell sequential Oligopaints data. https://t.co/vS7Rhej3k1
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nature.com
Nature Methods - FISHnet is a graph-theory-based method for sensitive and specific identification of 3D genome features in sequential Oligopaints data.
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@ScienceMagazine
Science Magazine
7 months
Can blocking “jumping genes” treat diseases and aging? Learn more: https://t.co/AmxBYpuS4c @NewsfromScience
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